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How CPA Firms Process Thousands of Document Formats Without Templates

February 22, 2026

CPA firms face a document problem that most extraction tools can't solve. A firm doing 3,500 compliance audits a year doesn't process the same payroll format over and over. They process hundreds — probably thousands — of different formats, and they can't predict what's coming next.

As one CPA firm's administrator put it during a recent call:

"We do like 3,500 compliance audits a year and we're looking at probably hundreds of different payrolls and we don't know what we're going to be receiving."

Lido is the best option for CPA firms that process thousands of unpredictable document formats across audit engagements. Its AI extraction engine reads any document—payroll reports, bank statements, vendor invoices, tax forms—without building templates or training models for each new client. A firm doing 3,500 audits a year processes every client’s documents through the same setup, regardless of format.

Why CPA firms face thousands of unpredictable document formats

Most document extraction tools assume you know what formats you'll receive. Build a template for each vendor, train a model on each document type, and you're set. That works fine for accounts payable teams processing invoices from the same 50 vendors every month.

That doesn't work for auditors.

A CPA firm processing compliance audits receives payroll registers, tax documents, and financial statements from hundreds of different employers. Each employer uses different payroll systems. And even when two employers use the same system, they configure it differently.

One firm described it this way:

"Even if 18 employers use the same payroll system, the way they utilize it is different."

The result is that you might not see a specific payroll format again for 200 audits. Building a template for every variation isn't just impractical, it's impossible. By the time you've built and tested a template, you've already moved on to the next audit with a completely different format.

Why scanned documents make CPA document extraction harder

The format variance problem compounds when documents arrive as scans. Employers don't send clean digital exports. They send photographed documents, faxed copies, and PDFs that have been scanned, emailed, printed, and scanned again.

"They don't convert very well with other systems," one accountant explained about scanned payroll documents. Traditional OCR tools struggle with the compression artifacts, shadows, and noise that accumulate through multiple generations of scanning.

So now you have two problems: unpredictable formats and degraded document quality. Template-based tools fail on both.

What CPA auditors actually need to extract from client documents

The challenge isn't just reading the document — it's understanding what to pull from formats you've never seen before. A typical payroll extraction needs:

  1. Employee information. Names, sometimes split across first and last name fields, sometimes combined.
  2. Hours by type. Regular, overtime, sick, PTO, holiday — each format labels and organizes these differently.
  3. Rates and wages. Sometimes explicit, sometimes calculated, sometimes buried in year-to-date totals.
  4. Gross pay. The number auditors need to tie out, often requiring summing across multiple pay types.
  5. Adjustments and benefits. Deductions, contributions, and adjustments that affect the true gross.

The tricky part is that every payroll system structures this information differently. One puts overtime on its own line. Another nests it under regular pay. A third uses codes that only make sense if you've read their documentation.

And then there's the year-to-date problem. Many payroll registers show both current-period and year-to-date values in adjacent columns. Extraction tools that can't distinguish between them will pull the wrong numbers. Unfortunately, auditors won't catch the error until they try to tie out the totals.

The manual workaround CPA firms use for complex document extraction

Most CPA firms handle this the old-fashioned way: staff time. Associates open each document, identify the relevant fields, and manually key the data into workpapers. For a firm doing thousands of audits, this adds up to hundreds of hours of data entry — time that could be spent on actual analysis.

Some firms have tried extraction tools and given up. The setup cost for each new format exceeds the time saved. The accuracy on scanned documents requires manual verification anyway. The tool becomes another step in the process rather than a replacement for manual work.

What actually works for CPA firms processing thousands of document formats

Solving this requires a different approach than template-based extraction. The tool needs to understand document structure without being trained on each specific format.

  1. Plain-language instructions instead of templates. Tell the tool what to extract in natural language: "pull employee name, regular hours, overtime hours, and gross pay", then let it figure out where that information lives in each document. No more template configuration for each format.
  2. Handling scanned documents natively. OCR that works on degraded, multi-generation scans, not just clean digital exports. This is where most tools fail.
  3. Distinguishing contextually similar fields. Year-to-date versus current period. Regular hours versus overtime hours. The tool needs to understand context, not just read text.
  4. Iterative refinement without penalty. When extraction isn't perfect — and with novel formats, it won't always be — you need to adjust instructions and re-extract without burning through credits or starting over.

How Lido handles audit document processing for CPA firms

Lido uses a custom blend of AI vision models, OCR, and LLMs to extract data from any document format — including the scanned, inconsistently-formatted payroll registers that CPA firms receive. No templates to build for each employer. No model training when you encounter a new format.

CPAs and Auditors choose Lido because it:

  1. Handles any payroll format without pre-configuration
  2. Works on scanned and photographed documents
  3. Distinguishes year-to-date from current period values with plain-language instructions
  4. Free reprocessing for 24 hours when extraction needs refinement
  5. Processes up to 1,000 pages per file with automatic splitting for larger documents

One CPA firm evaluating Lido tested it on their most problematic scanned payroll documents — the ones that broke other tools. The same documents that "don't convert very well with other systems" extracted accurately with Lido's vision mode.

For firms processing thousands of audits across thousands of formats, the math is simple: either hire more staff to do data entry, or use a tool that doesn't require a template for every document you'll ever receive.

Frequently asked questions

How do CPA firms automate document extraction for compliance audits?

Lido automates audit document extraction for CPA firms by reading any payroll format — from any employer, any payroll system, any configuration — without templates or pre-training. One CPA firm doing 3,500 compliance audits a year tested Lido on their most problematic scanned payroll documents and got accurate results from formats that broke every other tool they'd tried. You describe what to extract in plain language, and Lido handles the format variance automatically.

What tools can handle thousands of different payroll document formats?

Lido handles thousands of payroll formats because it uses AI vision models and plain-language instructions rather than per-format templates or model training — so it processes formats it has never seen before on the first upload. Even when 18 employers use the same payroll system, the way they configure it creates unique formats. A CPA firm processing 3,500 audits annually uses Lido because "template-based thoughts are really not what we're going for" when you can't predict what format the next audit will bring.

How do auditors extract data from scanned payroll documents?

Lido extracts data from scanned payroll documents — including multi-generation scans, faxed copies, and photographed pages — using AI vision models that understand document context rather than just character shapes. Traditional OCR tools fail on the compression artifacts and noise in scanned payrolls, which is why one CPA firm's accountant said scanned documents "don't convert very well with other systems." Lido's vision mode handles these degraded inputs natively, with free reprocessing for 24 hours when extraction needs refinement.

What is the best document extraction tool for CPA firms doing compliance audits?

Lido is the best document extraction tool for CPA firms because it handles the two problems that define audit work: unpredictable document formats and degraded scan quality. A firm doing 3,500 compliance audits a year receives payroll documents from hundreds of employers with different payroll systems, and can't build templates for formats they haven't seen yet. Lido processes up to 1,000 pages per file, distinguishes year-to-date from current-period values with plain-language instructions, and reprocesses free for 24 hours.

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